Hospital Id Card Template
The abstraction was accustomed by the Ethics Committee of Xiangya School of Public Bloom Central South University (No. XYGW-2018-36) and performed according to the Declaration of Helsinki. The architecture and purpose of the accepted abstraction were acutely declared in the assay protocol; the agreement was registered at the Chinese Clinical Trial Registry with allotment cardinal ChiCTR1800018492 and is accessible at http://www.chictr.org.cn/listbycreater.aspx. All participants provided accounting abreast accord afore commutual an acceptance check as able-bodied as accouterment biological samples.

A hospital-based case–control architecture was used. Cases and controls were recruited from mothers of accouchement who were 1 year of age or earlier and presented in Hunan Children’s Hospital during March 2018 and February 2019 in Hunan, China.
In this study, CHD was authentic as a astringent structural aberancy in the affection or intrathoracic abundant argosy that are possibly or absolutely of anatomic significance31. All CHD cases were diagnosed by pediatric cardiologists through accepted examination, affection auscultation, and echocardiography, with some diagnoses added accepted through cardiac anaplasty or catheterization during the period. The accepted cases were classified according to the International Allocation of Diseases-10 (ICD-10). Mothers whose accouchement were diagnosed with CHD afterwards added complete diseases were called as cases, and mothers (from the aforementioned hospital) whose accouchement had neither CHD nor added complete ache were called as controls. Any participants who met any of the afterward belief were afar from this study: (1) assorted pregnancies; (2) clumsy to abet with the assay due to brainy affliction or astute affecting instability; (3) woman whose adolescent had any complete ache added than CHD, or tumour; (4) any complete diseases or ancestors history of complete disease; (5) abundant woman who was lactating; (6) any doubtable or accepted immunosuppression or immunodeficiency (acquired or primary) including animal immunodeficiency virus infection; (6) any history of gastrointestinal bump or currently adversity from any cancer/tumor; (7) any gastrointestinal diseases or non-gastrointestinal astute ache at the time of enrollment; (8) articulate or intravenous antibiotics aural the aftermost 6 weeks; (9) use of insulin or corticosteroids at the time of enrollment; (10) abiding assay with non-steroidal anti-inflammatory drugs, such as aspirin; (11) bartering probiotics or prebiotics captivated aural the aftermost 2 weeks; (12) abundant woman who did not accommodate claret or stool sample, or complete the questionnaire.
Overall, the abstraction comprised analyses of microbial DNA abandoned from begrimed samples and metabolites in claret samples of 196 abundant women: 101 mothers of breed with CHD (cases) and 95 mothers of breed with CHD (controls). Peripheral venous claret was calm in the morning the day afterwards acceptance and placed anon afterwards accumulating at 4 °C. Anniversary woman was accustomed a begrimed adornment and provided abundant instructions for sample collection. Begrimed samples afresh calm from anniversary woman were placed anon at − 18 °C. All samples were transported to the class aural 12 h and stored at − 80 °C until processing. In addition, advice accompanying to affectionate socio-demographic characteristics, diet, lifestyles, ache and bloom conditions, medication and comestible supplement use were captured in a abundant check completed by anniversary actor aloft acceptance and added accepted by consulting their Affectionate and Adolescent Bloom Manual and medical records. Advice on the baby’s gender, age, and final assay was calm by medical annal at Hunan Children’s Hospital.
Bacterial DNA was extracted from a complete of 196 arctic begrimed samples application the acclimation CTAB (cetyl trimethylammonium bromide) adjustment as ahead described32. Abandoned bacterial DNA was again acclimated as a arrangement for the addition of the V4 arena of 16S rRNA gene application the 515F/806R album for PCR33. A sequencing library of the V4 arena was generated application TruSeq DNA PCR-Free Sample Preparation Kit (Illumina, USA) afterward manufacturer's recommendations. For PCR products, Illumina-based sequencing was agitated out on an Illumina HiSeq2500 belvedere (Illumina Inc., San Diego, CA, USA) application the pair-end 250 bp protocol.

De-multiplexing 16S rRNA gene sequences and affection ascendancy were performed application the open-source bioinformatics activity Quantitative Insights into Microbial Ecology (QIIME) adaptation 1.9.134. Filtered sequences were amassed into operational taxonomic units (OTUs) based on 97% character application UPARSE adaptation 7.0.100135. Representative sequences for anniversary OTU were subjected to the SILVA132 database application the Mother software amalgamation to actuate the phylogeny with a bootstrap complete of 80%, and congenital into a phylogenetic timberline application MUSCLE adaptation 3.8.336,37. The sequences of all samples were downsized to 44,234 to bout the aberration in sequencing depth.
Alpha- and beta-diversity analyses were performed application QIIME adaptation 1.9.138, basing on a normalized OTU table. Alpha-diversity, aural sample diversity, was affected application Shannon index, Chao1 index, and the empiric species39. Statistical acceptation of alpha-diversity amid the case and ascendancy groups was analyzed with the beeline corruption assay which was performed in SPSS 24.0 (IBM, New York, USA). Beta-diversity, amid sample diversity, was affected with unweighted and abounding UniFrac ambit matrices and visualized application the account artifice of the arch alike assay (PCoA)40,41. Multifactorial permutational assay of about-face (PERMANOVA) (Adonis function, vegan package, R) of the UniFrac ambit was acclimated to assay the affiliation of infant’s CHD cachet with the microbiome beta-diversity while adjusting for covariates and assorted antecedent testing. The band discriminant assay (LDA) of aftereffect admeasurement (LEfSe) was acclimated to appraisal the aftereffect of the affluence of anniversary microbiota taxa on the aberration effect, and to analyze microbiota taxa that accept cogent differences in their demarcation42. False assay amount (FDR) was affected according to Benjamini-Hochberg, FDR-corrected p-value was denoted as QFDR and was acclimated for assorted assay corrections. Taxa that showed an LDA score > 2 at a QFDR < 0.05 were called for added analysis. Multivariate Affiliation with Beeline Models (MaAslin) was activated for affiliation testing of the metadata against the affluence of the cogwheel bacterial taxa articular in the LEfSe analysis, to deconfound the furnishings of covariates. Both the LEfSe and MaAslin were accessed online from http://huttenhower.sph.harvard.edu/galaxy with absence parameters. For beeline corruption analysis, PERMANOVA, and MaAslin, age, BMI, ethnicity, residence, cigarette smoking, booze consumption, abrogating activity events, and comestible assimilation were acclimated as covariates.
Ultra-high-performance aqueous chromatography-mass spectrometry (UPLC-MS)-based metabolic profiling of claret samples was performed on an Agilent 1290 Infinity UPLC arrangement (Agilent, Santa-Clara, California, USA) accompanying with a Triple TOF 5600 Micromass arrangement (AB SCIEX, Framingham, MA, USA) in both complete and abrogating ionization modes.
Plasma samples stored at − 80 °C were gradually aqueous at 4 °C and 100 µL aliquots were alloyed with 400 μL of algid methanol/acetonitrile (1:1, v/v). The admixture was vortexed for 1 min, placed at − 20 °C for 10 min, and centrifuged for 20 min (14,000 g, 4 °C). The afloat was broiled in a exhaustion centrifuge. For the MC analysis, the samples were re-dissolved in 100 μL acetonitrile/water (1:1, v/v)43. Affection ascendancy (QC) samples were able by bond all the samples appropriately as a affiliated sample, and again analyzed calm with the added samples. Regular intervals to admit a QC sample (every 20 samples) throughout the analytic action accommodate a set of abstracts from which adherence and repeatability can be assessed.
Chromatographic assay was performed application an Agilent UPLC system. Chromatographic break was run on ACQUITY BEH Amide 1.7 μm (2.1×100 mm) columns for both abrogating and complete models. The bang aggregate was 2.0 μL and the cavalcade temperature was set at 25 °C. The afterward gradients were acclimated for separation: 95% B over 0–1 min, 95–65% B over 1–14 min, 40% B for 2 min, 40–95% B over 18–18.1 min, and 18.1–23 min captivation at 95% at a breeze amount of 0.3 mL/min, breadth B is acetonitrile and A is an aqueous band-aid complete ammonium acetate (25 mL) and ammonia (25 mL).
After break by UPLC, accumulation spectrometry was performed application a Triple TOF 5600 accumulation spectrometer able with an electrospray ionization (ESI) antecedent operating in either abrogating or complete ion mode. ESI antecedent altitude were set as follows: nebulizer gas (ion antecedent gas 1), 60 psi; abetting heating gas (ion antecedent gas 2), 60 psi; blind gas, 30 psi; antecedent temperature, 600 °C; ion aerosol voltage floating, ± 5500 V. The MS/MS spectra were detected application information-based accretion (IDA) which was an bogus intelligence-based artefact ion browse mode. The ambit for IDA were set as following: decluttering potential, ± 60 V; blow energy, 35 ± 15 eV; exclude isotopes aural 4 Da, applicant ions adviser per cycle: 6.
The UPLC-Q-TOF/MS raw abstracts were adapted to mzXML files application Proteo Wizard apparatus and again candy application XCMS software for aiguille alignment to access a aiguille account complete the m/z, assimilation time, and aiguille breadth of anniversary sample. For aiguille picking, the afterward settings were used: centWave m/z = 25 ppm, peakwidth = c (10, 60), prefilter = c (10, 100). By application m/z and assimilation time pairs as identifiers for anniversary ion, we acquired the ion acuteness of anniversary aiguille and generated a cast complete sample names, arbitrarily defined aiguille basis (retention time-m/z pairs), and ion intensities. Afterwards ion appearance were extracted, alone the variables accepting added than 2/3 of the nonzero altitude ethics in all samples were kept for consecutive analysis. Afterwards actuality normalized based on aiguille areas, the complete and abrogating abstracts were accumulated into a abstracts set and alien into SIMCA-P 14.1 software (Umetrics, Umea, Sweden) for multivariate statistical analysis.
A supervised erect fractional atomic squares-discrimination assay (OPLS-DA) archetypal was acclimated to appearance statistical differences and analyze differentially bidding metabolites in mothers of breed with CHD about to the controls, and this archetypal was authentic by a about-face assay with 200 iterations44. The capricious accent for the bump (VIP) amount of anniversary capricious in the OPLS-DA archetypal was affected to announce its addition to the classification. The differentially bidding metabolites were accustomed by application two-tailed Student’s t-test and multivariable beeline regression. The archetypal adapted for abeyant confounders including age, BMI, ethnicity, residence, cigarette smoking, booze consumption, abrogating activity events, and comestible intake. P-value was adapted for assorted comparisons with the FDR algorithm according to Benjamini-Hochberg. Metabolite structural identification was performed by authentic analogous of accumulation cardinal (< 25 ppm) and analogous of second-stage spectra with the class self-built database. All metabolites were articular to akin 1 according to the Metabolomics Standards Initiative (MSI)45. Based on the differentially bidding metabolites, Kyoto Encyclopedia of Genes and Genomes (KEGG) alleyway assay (http://www.genome.jp/kegg/) was conducted to investigate the metabolomic pathways associated with the ache cachet of the offspring46. The accessory akin of anniversary metabolomic alleyway was affected by Fisher's exact test, and a p-value < 0.05 was admired as statistically significant.
Spearman alternation amid the about affluence of genera and the akin of claret metabolites was analyzed application R software. We alone performed the alternation in those genera and metabolites which were begin to be statistically cogent amid groups while authoritative for abeyant confounders as mentioned aloft (p < 0.05), and then, presented the after-effects by heatmap (for all correlations) and arrangement artifice (for correlations with complete amount aloft 0.3).
The statistical assay was performed in SPSS 24.0 (IBM, New York, USA). The after-effects were presented as a beggarly amount (standard error, SD) for connected variables, or as a admeasurement for absolute variables. The t-test was acclimated for connected variables and the chi-square assay for absolute variables to analyze cogent differences amid the case and ascendancy groups. A amount of p < 0.05 was advised as significant.
The definitions of important items including gut microbiota, metabolomics, and 16 S rRNA gene sequencing were apparent in Supplementary File 1.
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